News & Updates

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• Added batch correction (ComBat) to normalization workflow for removing technical batch effects (01/17/2026) ;
• Added support for gene co-expression network analysis - WGCNA (09/17/2025) ;
• Added support for median-of-ratio followed by log2 normalization (08/08/2025) ;
• Interactive QC diagnostic graphics (06/18/2025) ;
• Added more QC diagnostic graphics to identify outlier samples (05/29/2025);
• Added William's trend test for dose response module (05/29/2025);
• Added support for Madagascar Periwinkle (05/15/2025);
• Added "Sample Exclusion" in Data Normalization page (04/27/2025);
• Interactive PCA visualization in data processing steps based on user feedback (04/27/2025);
• Added support for Zhangshugang pepper (01/28/2025);
• Fixed the issue for highlighting data points in volcano plot (01/15/2025);
• Upgraded Java from version 17 to Java 21 LTS (12/16/2024);
• Added support to allow users to download all sig. genes in dose response analysis (11/25/2024);
• Fixed an issue for curve fitting when used together with results from DESeq2 (11/07/2024);
• Improved interface and documentations for tPOD calculation based on gene-level BMD (10/29/2024);
• Upgraded to PrimeFaces 14.0.4, and Jakarta EE 10 (09/16/2024);
• Added support for custom gene set library upload for gene expression analysis module (09/05/2024);
• Added QC diagnostics quality metrics based on omics data analysis framework for regulatory application (R-ODAF) (07/05/2024);
• Added QC diagnostics for raw data processing (06/20/2024);