News & Updates

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• Please use OmicsForum for discussion and troubleshooting requests so that more people can benefit (invitation code: xialab_omics!).
• Improved gene annotation for poorly annotated genomes: ID mapping is accepted based on the number of matched genes, with fallback to locus tags (09/20/2026);
• Added subgroup comparisons on a secondary factor (e.g. Female_Treatment vs. Female_Control) for differential expression and dose response designs (09/04/2026);
• Improved tPOD summary and outlier report for dose response analysis; high-resolution download of gene dose-response curves (08/24/2026);
• Added a sample editor for reviewing and correcting sample metadata; module-trait correlation statistics are now exported for WGCNA (08/21/2026);
• Low-count filtering by CPM is now based on the smallest group; normalization falls back automatically when the requested method is not applicable to the data (08/05/2026);
• Volcano plots now display the numbers of up- and down-regulated features (07/07/2026);
• Added multi-group (omnibus) and multi-covariate differential expression for edgeR and DESeq2, on par with limma (06/12/2026);
• Enhanced meta-analysis module; default image resolution increased to 150 DPI (03/23/2026);
• Added CPM-based low-count filtering option for RNA-seq data (03/05/2026);
• Added raw data processing support for DePlexer output together with kallisto (02/17/2026);
• Added UpSet diagram to compare significant genes across multiple comparisons (01/29/2026);
• Added gene accumulation plot and improved outlier report for dose response analysis (01/28/2026);